Installation

Installation via PyPI

This Python package can be installed with pip:

pip install hf-deepali

The latest development version can be installed directly from the GitHub repository, i.e.,

pip install git+https://github.com/BioMedIA/deepali.git

Alternatively, it can be installed from a previously cloned local Git repository using

git clone https://github.com/BioMedIA/deepali.git && pip install ./deepali

This will install missing dependencies in the current Python environment from PyPI. To use conda for installing the required dependencies (recommended), create a conda environment with pre-installed dependencies before running pip install. For further information on how to create and manage project dependencies using conda, see conda/README.md.

Additional optional dependencies of the deepali.utils library can be installed with the command:

pip install hf-deepali[utils]
# or pip install git+https://github.com/BioMedIA/deepali.git#egg=deepali[utils]